Boasting about backyard biodiversity

The easiest way for an aspiring naturalist to explore wildlife is by stepping out into their own backyard. Try it yourself. As I write this, I can look through my window at a Karoo Thrush hopping about my garden. But this post is not about the tiny garden surrounding my current apartment, but rather about my childhood home. I was tremendously fortunate to grow up on a 60 hectare farm, where  first discovered my love for nature.

Between wrapping up my PhD and starting my current lecturing position, I spent a few months of unemployment back in the house I grew up in. During that time, I discovered the thrill of recording unobtrusive nocturnal critters using a camera trap. Every afternoon, I set up the camera trap and eagerly explored the footage the following morning. It was so much fun.

After enough time, even I was amazed by the variety of species that lived on this relatively small farm. Perhaps, I should rephrase that last sentence. You see, calling it a farm is not accurate because it hasn’t been used for agricultural in more than ten years. The last cows were removed back in 2004 and since then the land was left dormant and only managed to minimise the risk of wild fire.

Still, I captured footage of 18 different mammal species, which is remarkably high for such a small area. Moreover, the camera trap is unlikely to capture any footage of bats and small rodents, so the total mammal diversity is probably even higher. I decided to write up these observations and the results have just been published online in the African Journal of Ecology. Continue reading

How do correlations between climate and biodiversity arise? UPDATED

Anyone who as ever watched a David Attenborough documentary knows that biodiversity differs in areas with different climates. Only a few species an survive in hot and dry deserts whereas warm and wet tropical forests are teeming with life. But have you every stopped to wonder why this is so?

Why are certain climate conditions able to support many species and others not? More specifically, how does this work mechanistically?

This was the question my co-authors and I set out to answer in our most recent paper just published online at Global Ecology and Biogeography.

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What can Sudoku teach us about ecology and evolution?

Evolution is creeping into several different aspects of ecology. The latest buzz is all about integrating ecology and evolution. Perhaps you’ve heard of the  latest research trends in eco-evolutionary dynamics or community phylogenetics?

Theodosius Dobzhansky famously stated that “Nothing in biology makes sense except in the light of evolution“. This claim is undoubtedly true, but I’ve recently found myself wondering whether our obsession with evolution is actually clouding our ability to do good ecological research.

Please don’t misunderstand me, I am not implying that evolution is not important in explaining patterns in nature, nor am I suggesting that we should disregard evolutionary explanations for these patterns. Instead, I believe that in order to gain a deeper understanding of ecology, we should perhaps partially blind our views using “evolution blinkers”. In fact, I’d even be so bold as to claim that unless we blind ourselves to evolution, we will never be able to fully grasp the true nature of ecological processes. Unifying ecology and evolution might actual limit our ability to build ecology as a science.

Richard Feynman used a useful chess analogy to explain how physics works. I’ll borrow this style of argument to explain my stance on ecology and evolution. However, since chess is too complicated for my liking, I’ll use an even simpler game: Sudoku. Continue reading

Long-term monitoring generally underestimates negative trends in biodiversity

Modern conservation and environmental management rely on data. Unless you can actually show cold, hard evidence of natural deterioration, you open yourself up to criticism from denialists and other eco-skeptics. It is too easy for industry lobbyists to dismiss conservation recommendations as tree-hugger scare-mongering.

So conservationists, being the idealists that we are, decide to gather evidence for downward trends of various aspects of biodiversity. Unfortunately, efforts to quantify biodiversity trends are a major challenge. Not because measuring trends in diversity is particularly difficult, but rather because long-term monitoring is susceptible to sampling artefacts.

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The scalability of macroecology

Russian Dolls

No matter at which scale you look at it, nature is remarkable.

Like many others, I was taught ecology in a very hierarchical way: individual organisms are part of a wider populations of species, collections of species form communities and communities come together to make up ecosystems. Similarly, single trees are nested within forests, which aggregate to form biomes. I’m sure you can come up with many comparable examples.

The trouble with such neat spatial hierarchies is that they lure us into believing that if patterns appear similar at several different spatial scales, then the processes leading to these patterns should also be similar. It’s so easy to assume that nature is like a set of Russian Dolls: each daughter exactly the same as its mother, only slightly smaller. But this is not necessarily the case.

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Species distribution modelling is not as simple as you think

One of the most fruitful sub-fields in ecology is using climate variables to predict species’ geographic distributions. For the uninitiated, species distribution modelling assumes that species are limited in their distributions to suitable climate zones. By studying the environmental conditions where species are known to occur, you can infer the total geographic distribution by calculating the suitability of unsampled regions based on the environmental. Furthermore, using the same principle, species distribution modelling can forecast the effect of future climate change of the distribution of life on earth.

Unfortunately, studies have shown that these fancy climate-based techniques cannot consistently outperform much simpler ones based on spatial phenomena. For instance, spatial interpolation between point occurrences outperforms sophisticated climate-based predictions. Similarly, elaborate climate-based predictions perform no better than expected from random chance.

The trouble lies in the spatially-structured world we live in. Species distributions, especially at large spatial scales, are spatially-autocorrelated due to constrained dispersal. Similarly, climate variables are also spatially structured because the meteorological processes at proximal regions are generally more similar than those at distant sites.

When trying to link species distributions to climate conditions, the challenge lies is separating spatial and environmental correlations in species distributions. Specifically, we should identify three patterns in the geographical species distributions.

  • We must first identify ‘true’ correlations with the environment, which are independent of spatial patterns (E|S).
  • Next, we must identify the environmental-associations that also have a strong spatial structure (E∩S). This is known as exogenous spatial autocorrelation because it is due to autocorrelation is the underlying variables.
  • Finally, we need to identify spatial patterns that are completely independent of environmental conditions (S|E). This is called endogenous spatial autocorrelation because it supposedly stems from spatial processes, such as dispersal.

In our latest study just published online at Ecography, we set out to quantify the degree of environmental correlation, exogenous and endogenous spatial autocorrelation in the distributions of 4 423 species of amphibians, reptiles, birds and mammals in Africa. Continue reading

MacArthur and Wilson’s Radical Theory wasn’t actually radical (even great ideas in ecology go unnoticed)

Most ecologists know about the Theory of Island Biogeography; the theory that diversity patterns on islands are the consequence of dispersal from a mainland source. Robert MacArthur and E.O. Wilson presented this theory first as a research paper in 1963 and then as a monograph in 1967. The rest, as they say, is history.

The Theory of Island Biogeography is remarkable because it suggests that patterns of species co-existence are the consequence of chance, history and random dispersal. Before its publication, community ecologists generally assumed that species co-existence was due to deterministic niche-assembly, where the number and relative abundance of species were a result of ecological niches and the functional roles of each species.

The theory placed randomness at the forefront to community ecology. It also paved the way for Stephen Hubbell’s Unified Neutral Theory of Biodiversity and Biogeography; one of the most influential ecological theories in 21st century. In fact, the introductory chapter of Hubbell’s monograph (like this blog post) was titled “MacArthur and Wilson’s Radical Theory” in reverence to their path-breaking work.

Like the theory itself, MacArthur and Wilson have also reached cult-like status. Perhaps a most telling way of illustrating this fact is not by listing the prizes awarded to these two men (and there were many), but rather by listing the academic prizes named after them! The Ecological Society of America, for instance, awards the ‘Robert H. MacArthur Award‘ to eminent mid-career ecologists and the American Society of Naturalists grants the ‘Edward O. Wilson Naturalist Award‘ to mid-career researchers who make significant contributions to a particular ecosystem of group of organisms. Similarly, the International Biogeography Society has the ‘MacArthur & Wilson Award‘ for notable contributions to the field of biogeography.  Needless to say, MacArthur and Wilson are very influential and well-respected by contemporary ecologists (well, in most cases…).

The funny thing is that their paradigm shifting idea was actually proposed two decades earlier, by the less well-known lepidopterist Eugene Munroe. Continue reading